PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0230s0015.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HB-other
Protein Properties Length: 504aa    MW: 55209.4 Da    PI: 7.8861
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0230s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.37.1e-054294532347
                           SS--HHHHHHHHHHCTS-HHHHHHH CS
              Homeobox  23 rypsaeereeLAkklgLterqVkvW 47 
                            yps+e ++eLA+++gL  +qV++W
  Sphfalx0230s0015.1.p 429 AYPSKEVKTELAESTGLHFSQVSNW 453
                           7************************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.248399464IPR001356Homeobox domain
SMARTSM003890.0011401468IPR001356Homeobox domain
SuperFamilySSF466891.33E-6403470IPR009057Homeodomain-like
CDDcd000861.45E-4403453No hitNo description
Gene3DG3DSA:1.10.10.607.1E-11406463IPR009057Homeodomain-like
PfamPF059208.7E-7425454IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MNSGGFRRIR LSSNLTLRFR RSPMPADICN AEVTKRGGAD ADWELESFSD IYPELFQSDH  60
NTYYSCLRID DQEEESSDSS CFTRLPDLDC LAYQIWEQED EEVVDSFLLP ISISSVCTEG  120
IVNDMRYGGL FLESDLEHAC SLQQQNLLQT APEFALGGTA ARENIGRCCR AEFAIARNAY  180
YEQRENLRSV TPVASSQLSL ALADDAQNAA SGRHVATDEI MESFSTETFV ESCLVAVSPS  240
ASSSLEQQPP AATKFPMISH SSETSSRASS NTSALHKLPP PAAARSVDDA HHHHRGNNNN  300
KRTRKRLVLK KKAAAVDAIA DTCDSDSKRL AANGKHTKTS SSAAVTYQDS TATMYIATRQ  360
REKTDQQAAG ASSSSSLQRS RDHVNENKSL AKKKARKGKR HHRNGTRLPA AAVAMLQDWT  420
AANCTVDSAY PSKEVKTELA ESTGLHFSQV SNWLSCWRDK HNLQRQMRNL KAMVAIAGGT  480
STRAQLKTMA TAGGTSTRAQ LRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-